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4.60 from 5 votes

Banana Cream Cheese Muffins Recipe (with Cheesecake Filling)

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Banana Cream Cheese Muffins Recipe (with Cheesecake Filling) is the bakery-style muffin that hides a sweet whipped cream cheese cheesecake center inside a moist banana muffin, and Maddie says these taste like banana bread married a cheesecake. Soft, sweet, ridiculously easy, and bakes up in 25 minutes. If you love a bakery-style cheesecake-stuffed pastry like our Cream Cheese Cookies, these Banana Cream Cheese Muffins are your new breakfast staple.

Banana Cream Cheese Muffins fresh from the oven with melted cheesecake center showing through the top.Pin

Three ripe bananas, a hidden cheesecake filling whipped from cream cheese and sugar, and a 25 minute bake deliver bakery-style stuffed banana muffins for breakfast or coffee with friends.

Banana Cream Cheese Muffins Quick Look

  • 🕐 Prep Time: 15 minutes
  • 🍴 Cook Time: 25 minutes
  • Total Time: 40 minutes
  • 🍽 Servings: 12 muffins
  • Calories: Approximately 285 kcal per muffin
  • 🌶 Flavor Profile: Moist banana bread, sweet whipped cream cheese cheesecake center, cinnamon warmth (bakery-style stuffed muffin).
  • Difficulty: Easy, on par with our other from-scratch baking recipes.

Quick Answer

How do you make cream cheese filling for muffins?

Whip 8 ounces of room-temperature cream cheese with 1/4 cup granulated sugar, 1 large egg, and 1 teaspoon vanilla extract until smooth and fluffy. Refrigerate 10 minutes to firm up so it dollops cleanly into the muffin batter. The filling is essentially a small cheesecake mixture that bakes inside the muffin without sinking.

Jump to:

Why This Recipe Works

Click to see the technique science
  • Three very ripe bananas. Brown-spotted bananas deliver maximum natural sugar and banana flavor. Yellow bananas under-perform.
  • Cream cheese filling chilled before assembly. 10 minutes in the fridge firms the filling so it sinks just slightly into the batter instead of disappearing.
  • Two-thirds batter, dollop filling, top with batter. The layering keeps the cheesecake center hidden until you bite in, the bakery surprise.
  • Do not overmix the batter. Fold just until combined. Overmixed muffins go tough and rubbery, undermixed flecks of flour bake out invisible.
  • Bake at 375F, not 350F. The higher temp gives muffins that signature bakery dome rise + golden top in 25 minutes.

Why You’ll Love This Recipe

  • Cheesecake hidden surprise. Bite into the muffin and discover the whipped cream cheese center.
  • Use up ripe bananas. Forgotten brown bananas on the counter are the BEST bananas for this recipe.
  • 40 minutes start to finish. 15 minutes prep, 25 minutes bake. Faster than a coffee shop run.
  • Family approved. Maddie eats two before they fully cool.
  • Make-ahead breakfast. Wrap and freeze, thaw overnight, microwave 30 seconds the next morning.

Key Ingredients

Banana Cream Cheese Muffins close-up showing the cheesecake filling in the center of the moist banana muffin.Pin
  • Ripe bananas: 3 medium. Brown-spotted are best. Forgotten bananas in the fruit bowl.
  • All-purpose flour: 1.5 cups. Standard pantry flour, no need for cake flour.
  • Granulated sugar: 3/4 cup in the batter + 1/4 cup in the filling.
  • Cream cheese: 8 ounces, room temperature. Full-fat block cream cheese (not low-fat) for the cheesecake center.
  • Eggs: 2 large total (1 in batter, 1 in filling).
  • Butter + oil: 1/4 cup melted butter + 1/4 cup vegetable oil. Butter for flavor, oil for moisture longevity.
  • Whole milk: 1/4 cup. Adds tenderness to the batter.
  • Cinnamon, baking powder, baking soda, salt, vanilla: the bakery muffin pantry standards.

See the recipe card below for exact quantities and the full ingredient list.

Variations and Substitutions

One base recipe, six ways to switch up the flavor.

  • Banana nut cream cheese muffins: fold 1/2 cup chopped walnuts or pecans into the batter.
  • Chocolate chip: fold 1/2 cup mini chocolate chips into the batter for extra decadence.
  • Strawberry cream cheese: swap bananas for 1.5 cups diced strawberries and a teaspoon of lemon zest in the batter.
  • Pumpkin cream cheese: swap bananas for 1 cup pumpkin puree + 1 teaspoon pumpkin spice for fall.
  • Streusel topping: sprinkle 1/2 cup of brown sugar + flour + butter streusel over the tops before baking for crunch.
  • Gluten free: swap all-purpose flour for a 1:1 gluten-free baking blend.

How to Make Banana Cream Cheese Muffins

Whisking flour, sugar, baking powder, baking soda, salt, and cinnamon for the muffin dry mix.Pin
  1. Preheat oven to 375F. Line a 12-cup muffin tin with paper liners. Whisk together flour, sugar, baking powder, baking soda, cinnamon, and salt in a large bowl.
Mashing ripe bananas with eggs, melted butter, oil, milk, and vanilla for the wet ingredients.Pin
  1. In a separate bowl, mash 3 ripe bananas with a fork. Whisk in melted butter, oil, egg, milk, and vanilla until smooth.
Folding wet banana mixture into the dry ingredients until just combined.Pin
  1. Pour the wet banana mixture into the dry mixture and fold gently with a spatula until just combined. Do NOT overmix or muffins go tough.
Whipping cream cheese, sugar, egg, and vanilla together for the cheesecake filling.Pin
  1. In a third bowl, beat room-temp cream cheese, sugar, egg, and vanilla together until smooth and fluffy. Refrigerate 10 minutes to firm up.
Filling muffin tin with banana batter, cream cheese dollop in center, topped with more batter.Pin
  1. Spoon banana batter to fill each muffin cup 2/3 full. Dollop 1 to 2 teaspoons of cream cheese filling in the center. Top with more banana batter to cover.
Golden Banana Cream Cheese Muffins fresh from the oven in a muffin tin.Pin
  1. Bake at 375F for 22 to 25 minutes until a toothpick inserted on the SIDE (not center) comes out clean. Cool 10 minutes, then transfer to a wire rack.

Recipe Tips & Tricks

Six moves that separate bakery-style banana cream cheese muffins from dense disappointing ones.

  • Use VERY ripe bananas. Brown-spotted, soft. Yellow ones taste like nothing.
  • Room temp cream cheese. Cold cream cheese will not whip smooth. 30 minutes on the counter minimum.
  • Do not overmix the batter. Fold just until combined, lumps are fine. Overmixed gluten goes tough.
  • Chill the filling 10 minutes. Firms the cheesecake mixture so it sinks slightly into the batter, not all the way through.
  • Toothpick test on the side, not the center. The cream cheese center will read “wet” but the muffin is done.
  • 375F for the dome. The higher temp gives that bakery muffin dome rise.

Serving Ideas and Suggestions

  • Breakfast on the run: Wrap one in a napkin for a portable breakfast with coffee.
  • Brunch spread: Plate alongside our Blueberry Lemon Poke Cake for a brunch dessert table.
  • Coffee shop afternoon: Warm 10 seconds in the microwave and serve with hot coffee or chai.
  • Pack lunch dessert: One muffin in the kid lunch box is the easiest sweet they will eat.
  • Holiday breakfast: Perfect alongside scrambled eggs and bacon on Christmas or Thanksgiving morning.
Stack of fresh Banana Cream Cheese Muffins on a plate showing the cheesecake center filling.Pin

Bake a batch of these Banana Cream Cheese Muffins this weekend and tell us how the cheesecake center turned out. Tag us on Instagram @ThisSillyGirlsKitchen.

Banana Cream Cheese Muffins FAQs

Why do my muffins sink in the middle?

Overmixed batter, oven not preheated, or opened too early. Fold gently, preheat fully to 375F, and avoid opening the oven during the first 18 minutes.

Can I make these gluten free?

Yes. Swap all-purpose flour 1:1 for a gluten-free baking blend like Bob’s Red Mill 1:1 or King Arthur Measure for Measure.

How do I store cream cheese muffins?

Refrigerate in an airtight container up to 5 days (the cream cheese filling requires fridge storage). Microwave 20 seconds to warm before serving.

Can I freeze banana cream cheese muffins?

Yes. Cool fully, wrap individually in plastic wrap, then bag and freeze up to 2 months. Thaw overnight in the fridge, microwave 30 seconds.

Why does the cream cheese sink to the bottom?

The filling was too warm when added. Chill the cream cheese filling 10 minutes in the fridge before assembling to firm it up so it sinks just slightly into the batter.

Can I add nuts or chocolate chips?

Yes. Fold 1/2 cup chopped walnuts, pecans, or mini chocolate chips into the banana batter. Add at the end of mixing to keep them whole.

If you made these Banana Cream Cheese Muffins, leave a star rating below. Tag us on Instagram @ThisSillyGirlsKitchen.

For the after school freezer aisle move that beats the microwave every time, our hot pockets in an air fryer for kid-approved after school snacks hits the crispy golden crust the box always promised. 360 degrees, 13 to 15 minutes, no spray, no flip, freezer to plate in 16 minutes.

Looking for more? Try this easy strawberry butter for another easy family favorite.

Looking for more? Try crescent roll cinnamon rolls for another easy family favorite.

Love an easy muffin? Try our bakery style pistachio muffins next, made with a pudding mix shortcut.

When peaches are in season, do not miss our fresh peach muffins with streusel.

Have ripe bananas? Whip up these banana cupcakes with brown sugar frosting too.

For a fun cupcake, bake our coconut topped pina colada cupcakes.

Pair these muffins with our creamy yogurt fruit smoothie for an easy breakfast.

Serve these with our homemade munchkins for a sweet brunch spread.

Craving more cozy muffins? These pumpkin cream cheese muffins are the fall version of these banana muffins, with a cheesecake center.

For a heartier oat studded bake, try our apple banana muffins next.

Take banana baking up a notch with our chocolate chip banana bundt cake.

If banana plus cream cheese is your combo, our banana cupcakes with cream cheese frosting take it full dessert.

When the table wants savory too, our breakfast bagel sandwich is the 25 minute answer.

Craving savory instead of sweet? Our garlic cheddar cheese muffins are a 30 minute side dish hero.

Banana fans, our banana pudding cheese ball turns the pudding classic into a party dip.

For a bakery-style morning, our cherry danish turns puff pastry into glazed, crumble-topped perfection.

For another quick breakfast bake, our easy berry danishes come together fast with store bought puff pastry.

Add our cute little Mini Cinnamon Rolls to your next brunch board.

Add our playful Flowerpot Cupcakes to your spring dessert lineup.

For a cozy breakfast bake, try our Honey Bun Bread Pudding.

For a quicker shortcut version, try our Easy Banana Cake Mix Muffins.

Craving a quick morning treat? These easy cinnamon rolls are ready in 25 minutes.

For another fun breakfast treat, try our homemade pop tarts.

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4.60 from 5 votes

Banana Cream Cheese Muffins Recipe (with Cheesecake Filling)

Prep: 15 minutes
Cook: 24 minutes
Banana Cream Cheese Muffins Recipe (with Cheesecake Filling), bakery-style stuffed muffins with a hidden whipped cream cheese cheesecake center. Soft, sweet, ready in 40 minutes.
Servings 12 servings

Ingredients
  

For the filling:

Instructions

  • Preheat the oven to 350°F. Line 12 muffin cups with liners, set aside.
  • In a large bowl, whisk together the dry ingredients: flour, baking powder, baking soda, cinnamon, and salt. Set aside.
    1 ½ cups all-purpose flour, 1 teaspoon baking powder, 1 teaspoon baking soda, ½ teaspoon ground cinnamon, ¼ teaspoon salt
  • Whisk together the mashed bananas, sugar, egg, and vanilla in a medium bowl. Pour the wet ingredients into the dry and stir until combined; set aside.
    1 ½ cups mashed bananas, ½ cup granulated sugar, 1 large egg, 1 teaspoon vanilla extract
  • In a large bowl with an electric mixer or the bowl of a stand mixer, whip the room temperature cream cheese on medium speed until smooth.
    8 ounces cream cheese
  • Add the sugar, milk, flour, and vanilla, and mix until combined.
    5 tablespoons granulated sugar, 2 teaspoons whole milk, 2 teaspoons all-purpose flour, 1 teaspoon vanilla extract
  • Fill each muffin liner halfway full with the muffin batter.
  • Evenly distribute the creamy filling between each muffin. Smooth out the top.
  • Add the remaining batter on top of each muffin. Smooth out the top and then take a toothpick and swirl the tops of the muffins so a little of the cream cheese mixture peaks through, and you have a cream cheese swirl.
  • Bake muffins for 22-24 minutes until a toothpick inserted into the center comes out clean. Let cool for 5 minutes in the muffin tin, take the muffins out, and cool completely on a wire rack.

Notes

  • This makes a big batch of 12 muffins, but you can easily double it to feed more or halve the recipe as needed.
  • Tons of custom options, see my tips above on that.
  • Great for a make-ahead breakfast.
  • This freezes well, see my tips above on how to store.
  • The filling can also be used for Pumpkin Muffins and makes the best blueberry muffins!

Nutrition

Calories: 200kcal | Carbohydrates: 31g | Protein: 4g | Fat: 7g | Saturated Fat: 4g | Polyunsaturated Fat: 0.4g | Monounsaturated Fat: 2g | Trans Fat: 0.002g | Cholesterol: 33mg | Sodium: 206mg | Potassium: 151mg | Fiber: 1g | Sugar: 16g | Vitamin A: 287IU | Vitamin C: 2mg | Calcium: 40mg | Iron: 1mg
Nutrition Disclaimer
Course Baked Good, Breakfast, Dessert
Cuisine American

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4.60 from 5 votes (3 ratings without comment)

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Recipe Rating




14 Comments

  1. Bananas Are Doing the Moisture + Fat Job

    Mashed bananas bring natural moisture, tenderness, and a subtle richness. In quick breads and muffins, bananas can partially replace fat without sacrificing softness. Adding butter on top of that would risk overly dense or greasy muffins.

    Cleaner Banana Flavor (Butter Would Compete)

    Butter has a strong dairy aroma and flavor. In this recipe, the star is banana + cinnamon, with a cream cheese swirl as the supporting act.

    Butter would:

    Mute the banana flavor

    Compete with the tang of the cream cheese

    Push the muffins toward “cake” instead of “banana muffin”

  2. I read the comments. Get ready to make it but notice no butter but saw the writer who make this was supposed to add butter & I don’t see it????

  3. 3 stars
    I was so hopeful. Not enough liquid. The muffins were tough and dry. The cream cheese part was good.

  4. The recipe gives an alternative for the butter in the muffin base but I don’t see butter as an ingredient listed in the recipe. Is there butter needed?

  5. My goodness!! Made them and they are delicious!!! I would say it’s the best banana muffin I’ve ever had! Mine wasn’t as pretty as yours but they were still delicious! Thank you for sharing the recipe

  6. 5 stars
    Made these for my Mom’s 82nd birthday which just so happens to be today. She absolutely loves them. I couldn’t have done this without you, Dana. I was going to include a photo of them as they were picture perfect, but didn’t see an option to do so. No worries.
    Thank you,
    Todd

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